PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509726.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 657aa    MW: 72277.5 Da    PI: 5.365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12481526454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  XP_004509726.1 481 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 526
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5165249IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-15480531No hitNo description
SuperFamilySSF474591.7E-18480546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10481526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18481546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16483532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MTDYRSPPTM NIWTDENSSV MEAFMSTSDL SSLWLPTPHS AASTTTPLTD PTRTQTQPLF  60
NQETLQHRLQ SLIEGSRESW TYAIFWQPSH DYSSGAPLLG WGDGYYKGED EKEKGKKVIK  120
TTSPEEQAHR KKVLRELNSL ISGSSGSPDD AVEEDVTDTE WFFLTSMTQS FVNSSGSLSQ  180
AYFNSTPVWI SGPDRLSISA CERARQAQFL GLQTLVCIPT PSSNGVVELA STEIIPYSSD  240
LMEKVRALFN FNNPEAGSWP LNSVTTDQSE NDPSSLWLND PSGSAGIEIK DSVNAVNTTV  300
SANAAIGKSL QFETQTHGSS STLTETPNVI HVHNAQRNQN QNQSFFPKEL NFSSSMKPES  360
GEILNFGESK KSSYSAVNGN GNGNFFSGQS PFAAGEENRK RRSPVSRSSV DDGILSFTSG  420
VLLPASNMKS SGGIGTGGDS DQSDLEVSVV KEADSSRVIE PEKRPRKRGR KPANGREEPL  480
NHVEAERQRR EKLNQRFYSL RAVVPNVSKM DKASLLGDAI SYINELKEKL QGLESSKGEL  540
EKQLDTTKKE LELASNKNPL LPLDKEKLKT NCKLIDLDIE VKVIGWDAMI RVQCSKKNHP  600
AAKLMVALKE LDVEVNHASV SVVNDLMIQQ ATVNMGNQFY TKEQLLSVLS SKIGDAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-69572521195Transcription factor MYC3
4rqw_B4e-69572521195Transcription factor MYC3
4rs9_A4e-69572521195Transcription factor MYC3
4yz6_A4e-69572521195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462470KRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509726.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLG7LHR20.0G7LHR2_MEDTR; Basic helix loop helix (BHLH) family transcription factor
STRINGGLYMA01G12740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-175bHLH family protein